Organizing Committee
- Elizabeth Allman
University of Alaska Fairbanks - Cécile Ané
University of Wisconsin - Madison - Elizabeth Gross
University of Hawai'i at Mānoa - Barbara Holland
University of Tasmania - Laura Kubatko
The Ohio State University - Simone Linz
University of Auckland - Siavash Mirarab
UCSD - John Rhodes
University of Alaska Fairbanks - Sebastien Roch
University of Wisconsin-Madison - Leo van Iersel
Delft University of Technology
Abstract
A fundamental challenge that spans nearly all areas of evolutionary biology is the development of effective techniques for analyzing the unprecedented amount of genomic data that has become readily available within the last decade. Such data present specific challenges for the area of phylogenetic inference, which is concerned with estimating the evolutionary relationships among collections of species, populations, or sequences. These challenges include development of evolutionary models that are sufficiently complex to be biologically realistic while remaining computationally tractable; deriving and implementing algorithms to efficiently estimate phylogenetic relationships that use models whose theoretical properties are well-understood and therefore interpretable; and devising ways to scale novel methodology developed to handle datasets that are increasingly large and complex.
This semester program brings together mathematicians, statisticians, computer scientists, and experimental biologists to address the challenges involved in genome-scale phylogenetic inference. An overarching goal is to unite biologically-sound modeling with algorithms that can be implemented in a computationally tractable manner and that scale as both the number of species and the amount of genetic data increase. Specific topics to be investigated include: theory and practice of model-based inference for trees and networks, combinatorial and algebraic approaches for inferring phylogenies, software and algorithm development for inference and visualization, Bayesian approaches to phylogenetic inference, models for phylogenetic diversity and node dating, and methods for assessing model fit.
Confirmed Speakers & Participants
Talks will be presented virtually or in-person as indicated in the schedule below.
- Speaker
- Poster Presenter
- Attendee
- Virtual Attendee
-
Elizabeth Allman
University of Alaska FairbanksSep 1-Dec 6, 2024
-
Cécile Ané
University of Wisconsin - MadisonSep 16-20, 2024; Oct 21-25, 2024
-
Hector Banos
California State University San BernardinoSep 1-Dec 6, 2024
-
Mukul Bansal
University of ConnecticutNov 18-22, 2024
-
Minh Bui
Australian National UniversityNov 16-30, 2024
-
Marta Casanellas
Universitat Politècnica de CatalunyaOct 21-25, 2024
-
Julia Chifman
American UniversitySep 3-Dec 7, 2024
-
Caroline Colijn
Simon Fraser UniversitySep 16-20, 2024
-
Shelby Cox
University of MichiganSep 4-Dec 6, 2024
-
Mark Curiel
University of Hawaii at ManoaSep 4-Dec 6, 2024
-
Eva Czabarka
University of South Carolina, ColumbiaSep 3-Dec 7, 2024
-
James Degnan
University of New MexicoSep 1-Dec 8, 2024
-
Dimitrios Diamantidis
Indiana University, BloomingtonSep 3-Dec 6, 2024
-
Vu Dinh
University of DelawareSep 2-Dec 6, 2024
-
Péter Erdős
Alfréd Rényi Institute of Mathematics, ELRNSep 4-Oct 5, 2024
-
Mareike Fischer
University of GreifswaldSep 14-Nov 22, 2024
-
Andrew Francis
Western Sydney UniversityOct 21-25, 2024
-
Martin Frohn
Maastricht UniversitySep 1-Oct 1, 2024
-
Marina Garrote-López
Universitat Politècnica de CatalunyaSep 3-Dec 7, 2024
-
Olivier Gascuel
Centre National de la Recherche Scientifique (CNRS)Sep 15-Nov 25, 2024
-
Gillian Grindstaff
Oxford UniversitySep 2-Oct 4, 2024
-
Elizabeth Gross
University of Hawai'i at MānoaSep 3-Dec 7, 2024
-
Tracy Heath
Iowa State UniversitySep 4-Dec 6, 2024; Oct 21-25, 2024; Nov 18-22, 2024
-
Max Hill
University of California, RiversideSep 4-Dec 6, 2024
-
Mark Holder
University of KansasSep 4-Dec 6, 2024; Oct 21-25, 2024
-
Barbara Holland
University of TasmaniaOct 13-Nov 30, 2024
-
Niels Holtgrefe
Delft University of TechnologySep 3-Dec 7, 2024
-
Katharina Huber
University of East AngliaSep 4-Oct 4, 2024
-
Daniel Huson
University of TübingenSep 4-27, 2024
-
Lingling Jin
University of SaskatchewanSep 16-20, 2024
-
Mark Jones
Delft University of TechnologySep 3-Dec 7, 2024
-
Mark Jones
Delft University of TechnologyOct 21-25, 2024
-
Joshua Justison
Iowa State UniversitySep 1-Dec 23, 2024
-
Bryson Kagy
North Carolina State UniversitySep 4-Nov 3, 2024
-
Lacey Knowles
University Of MichiganSep 16-20, 2024
-
Sungsik Kong
University of Wisconsin-MadisonSep 1-Dec 30, 2024
-
Laura Kubatko
The Ohio State UniversitySep 2-Dec 7, 2024
-
Sudhir Kumar
Temple UniversityNov 18-22, 2024
-
Brandon Legried
Georgia Institute of TechnologySep 16-20, 2024
-
Simone Linz
University of AucklandSep 3-Dec 7, 2024
-
Pengyu Liu
University of California, DavisSep 4-Dec 6, 2024
-
Colby Long
The College of WoosterSep 16-20, 2024
-
Samuel Martin
Earlham InstituteSep 16-27, 2024
-
Frederick Matsen
Fred Hutchinson Cancer CenterNov 18-22, 2024
-
Bui Quang Minh
Australian National UniversityNov 18-22, 2024
-
Siavash Mirarab
UCSDSep 4-Dec 6, 2024; Sep 16-20, 2024; Nov 18-22, 2024
-
Erin Molloy
University of Maryland, College ParkSep 4-Dec 6, 2024; Nov 18-22, 2024
-
Vincent Moulton
University of East AngliaSep 4-Oct 4, 2024
-
Luay Nakhleh
Rice UniversityNov 18-22, 2024
-
Ikenna Nometa
University of Hawaii ManoaSep 2-Dec 8, 2024
-
Aïda Ouangraoua
Université de SherbrookeNov 18-22, 2024
-
Megan Owen
Lehman College, City University of New YorkSep 4-Dec 6, 2024; Oct 21-25, 2024
-
Benjamin Raphael
Princeton UniversitySep 16-20, 2024
-
John Rhodes
University of Alaska FairbanksSep 1-Dec 1, 2024
-
Sebastien Roch
University of Wisconsin-MadisonSep 4-Dec 6, 2024; Sep 16-20, 2024; Oct 21-25, 2024
-
Joe Rusinko
Hobart and William Smith CollegesSep 2-Dec 7, 2024
-
Charles Semple
University of CanterburySep 3-Dec 7, 2024
-
Megan Smith
Mississippi State UniversityOct 21-25, 2024
-
Claudia Solis-Lemus
University of WisconsinSep 4-Dec 6, 2024; Nov 18-22, 2024
-
Katherine St. John
City University of New YorkSep 4-Dec 6, 2024
-
Katherine St. John
City University of New YorkNov 18-22, 2024
-
Alexandros Stamatakis
Foundation for Research and Technology HellasNov 18-22, 2024
-
Marc Suchard
UCLANov 18-22, 2024
-
Seth Sullivant
North Carolina State UniversitySep 15-Oct 26, 2024
-
Krister Swenson
National Center for Scientific Research (CNRS)Sep 16-20, 2024
-
David Swofford
University of FloridaSep 4-Dec 6, 2024
-
Laszlo Szekely
University of South CarolinaSep 3-Dec 7, 2024
-
Benjamin Teo
University of Wisconsin-MadisonSep 4-Dec 6, 2024
-
Jonathan Terhorst
University of MichiganSep 16-20, 2024
-
Katie Thompson
University of KentuckySep 4-Dec 6, 2024; Oct 21-25, 2024
-
Leo van Iersel
Delft University of TechnologySep 1-Dec 1, 2024
-
Tandy Warnow
University of Illinois Urbana-ChampaignSep 16-20, 2024; Nov 18-22, 2024
-
Kristina Wicke
New Jersey Institute of TechnologySep 1-Dec 7, 2024
-
Ya Yang
University of Minnesota, Twin CitiesSep 4-Dec 6, 2024
-
Ruriko Yoshida
Naval Postgraduate SchoolSep 4-Dec 6, 2024
-
Guangchuang Yu
Southern Medical University.Nov 18-22, 2024
-
Norbert Zeh
Dalhousie UniversityOct 21-25, 2024
-
Rosana Zenil-Ferguson
University of KentuckyOct 21-25, 2024
Visit dates listed on the participant list may be tentative and subject to change without notice.
Application Information
ICERM welcomes applications from faculty, postdocs, graduate students, industry scientists, and other researchers who wish to participate. Some funding may be available for travel and lodging. Graduate students who apply must have their advisor submit a statement of support in order to be considered.
ICERM Funding for Fellowships
ICERM has funding available for fellowships to support faculty who attend one of our semester programs. These are often used to cover teaching buyouts so that participants
can be in residence throughout a semester program. We welcome requests from those not based at R1 research universities and those based at minority-serving institutions, including HBCUs, HSIs, TCUs, and AAPISIs.
The standard amount for a full semester is $25,000. Email ICERM’s Director for more information.
Your Visit to ICERM
- ICERM Facilities
- ICERM is located on the 10th & 11th floors of 121 South Main Street in Providence, Rhode Island. ICERM's business hours are 8:30am - 5:00pm during this event. See our facilities page for more info about ICERM and Brown's available facilities.
- Traveling to ICERM
- ICERM is located at Brown University in Providence, Rhode Island. Providence's T.F. Green Airport (15 minutes south) and Boston's Logan Airport (1 hour north) are the closest airports. Providence is also on Amtrak's Northeast Corridor. In-depth directions and transportation information are available on our travel page.
- Lodging/Housing
- Visiting ICERM for longer than a week-long workshop? ICERM staff works with participants to locate accommodations that fit their needs. Since short-term furnished housing is in very high demand, take advantage of the housing options ICERM may recommend. Contact housing@icerm.brown.edu for more details.
- Childcare/Schools
- Those traveling with family who are interested in information about childcare and/or schools should contact housing@icerm.brown.edu.
- Technology Resources
- Wireless internet access and wireless printing is available for all ICERM visitors. Eduroam is available for members of participating institutions. Thin clients in all offices and common areas provide open access to a web browser, SSH terminal, and printing capability. See our Technology Resources page for setup instructions and to learn about all available technology.
- Accessibility
- To request special services, accommodations, or assistance for this event, please contact accessibility@icerm.brown.edu as far in advance of the event as possible. Thank you.
- Discrimination and Harassment Policy
- ICERM is committed to creating a safe, professional, and welcoming environment that benefits from the diversity and experiences of all its participants. Brown University's "Code of Conduct", "Discrimination and Workplace Harassment Policy", "Sexual and Gender-based Misconduct Policy", and "Title IX Policy" apply to all ICERM participants and staff. Participants with concerns or requests for assistance on a discrimination or harassment issue should contact the ICERM Director or Assistant Director Jenna Sousa; they are the responsible employees at ICERM under this policy.
- Fundamental Research
- ICERM research programs aim to promote Fundamental Research and mathematical sciences education. If you are engaged in sensitive or proprietary work, please be aware that ICERM programs often have participants from countries and entities subject to United States export control restrictions. Any discoveries of economically significant intellectual property supported by ICERM funding should be disclosed.
- Exploring Providence
- Providence's world-renowned culinary scene provides ample options for lunch and dinner. Neighborhoods near campus, including College Hill Historic District, have many local attractions. Check out the map on our Explore Providence page to see what's near ICERM.
Visa Information
Contact visa@icerm.brown.edu for assistance.
- Need a US Visa?
- J-1 visa requested via ICERM staff
- Eligible to be reimbursed
- B-1 or Visa Waiver Business (WB) –if you already have either visa – contact ICERM staff for a visa specific invitation letter.
- Ineligible to be reimbursed
- B-2 or Visa Waiver Tourist (WT)
- Already in the US?
-
F-1 and J-1 not sponsored by ICERM: obtain a letter approving reimbursement from the International Office of your home institution PRIOR to travel.
H-1B holders do not need letter of approval.
All other visas: alert ICERM staff immediately about your situation.
ICERM does not reimburse visa fees. This chart is to inform visitors whether the visa they enter the US on allows them to receive reimbursement for the items outlined in their invitation letter.
Financial Support
This section is for general purposes only and does not indicate that all attendees receive funding. Please refer to your personalized invitation to review your offer.
- ORCID iD
- As this program is funded by the National Science Foundation (NSF), ICERM is required to collect your ORCID iD if you are receiving funding to attend this program. Be sure to add your ORCID iD to your Cube profile as soon as possible to avoid delaying your reimbursement.
- Acceptable Costs
-
- 1 roundtrip between your home institute and ICERM
- Flights on U.S. or E.U. airlines – economy class to either Providence airport (PVD) or Boston airport (BOS)
- Ground Transportation to and from airports and ICERM.
- Unacceptable Costs
-
- Flights on non-U.S. or non-E.U. airlines
- Flights on U.K. airlines
- Seats in economy plus, business class, or first class
- Change ticket fees of any kind
- Multi-use bus passes
- Meals or incidentals
- Advance Approval Required
-
- Personal car travel to ICERM from outside New England
- Multiple-destination plane ticket; does not include layovers to reach ICERM
- Arriving or departing from ICERM more than a day before or day after the program
- Multiple trips to ICERM
- Rental car to/from ICERM
- Flights on a Swiss, Japanese, or Australian airlines
- Arriving or departing from airport other than PVD/BOS or home institution's local airport
- 2 one-way plane tickets to create a roundtrip (often purchased from Expedia, Orbitz, etc.)
- Travel Maximum Contributions
-
- New England: $350
- Other contiguous US: $850
- Asia & Oceania: $2,000
- All other locations: $1,500
- Note these rates were updated in Spring 2023 and superseded any prior invitation rates. Any invitations without travel support will still not receive travel support.
- Reimbursement Requests
-
Request Reimbursement with Cube
Refer to the back of your ID badge for more information. Checklists are available at the front desk and in the Reimbursement section of Cube.
- Reimbursement Tips
-
- Scanned original receipts are required for all expenses
- Airfare receipt must show full itinerary and payment
- ICERM does not offer per diem or meal reimbursement
- Allowable mileage is reimbursed at prevailing IRS Business Rate and trip documented via pdf of Google Maps result
- Keep all documentation until you receive your reimbursement!
- Reimbursement Timing
-
6 - 8 weeks after all documentation is sent to ICERM. All reimbursement requests are reviewed by numerous central offices at Brown who may request additional documentation.
- Reimbursement Deadline
-
Submissions must be received within 30 days of ICERM departure to avoid applicable taxes. Submissions after thirty days will incur applicable taxes. No submissions are accepted more than six months after the program end.